martinezvbs

Postgraduate Associate / The Augert Lab / Department of Pathology / Yale School of Medicine

The Augert LabNew Haven

Pinned Repositories

ggstatsplot
Enhancing {ggplot2} plots with statistical analysis 📊📣
Language:R2.1k 45 596190
CRISPR
Analysis of CRISPR libraries
Language:Python0 1 10
IDR
IDR updated
Language:Python00
martinezvbs
Config files for my GitHub profile.
0 1 00
ReCo-adapted
ReCo: automated NGS read-counting of single and combinatorial CRISPR gRNAs.
Language:Python00
phip-flow
A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
Language:Python11 5 426
gopeaks
Peak caller for CUT&TAG data
Language:Go25 4 121
maxATAC
Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
Language:Python27 6 769
cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
Language:Nextflow85 158 12448
rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
Language:Nextflow943 157 674713

martinezvbs's Repositories

martinezvbs/CRISPR
Analysis of CRISPR libraries
Language:Python0 1 10
martinezvbs/IDR
IDR updated
Language:Python00
martinezvbs/martinezvbs
Config files for my GitHub profile.
0 1 00