martinleach

Absolve

Absolve antibody variable domain sequence analysis

ANARCI

Antibody Numbering and Antigen Receptor ClassIfication

asap

Amino-Acid Sequence Annotation Predictor (ASAP)

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

big-sleep

A simple command line tool for text to image generation, using OpenAI's CLIP and a BigGAN. Technique was originally created by https://twitter.com/advadnoun

cdhit

Automatically exported from code.google.com/p/cdhit

shinybbuddy

Shiny interface to birdbuddy analytics dashboard

TrialGPT

Code and data for TrialGPT.

martinleach/shinybbuddy

Shiny interface to birdbuddy analytics dashboard

martinleach/ANARCI

Antibody Numbering and Antigen Receptor ClassIfication

martinleach/asap

Amino-Acid Sequence Annotation Predictor (ASAP)

martinleach/bcbb

Incubator for useful bioinformatics code, primarily in Python and R

martinleach/big-sleep

A simple command line tool for text to image generation, using OpenAI's CLIP and a BigGAN. Technique was originally created by https://twitter.com/advadnoun

martinleach/cdhit

Automatically exported from code.google.com/p/cdhit

martinleach/TrialGPT

Code and data for TrialGPT.

martinleach/cudf

cuDF - GPU DataFrame Library

martinleach/dash_on_flask

Dash on Flask with login_required (and application factory pattern)

martinleach/Deep-Tutorials-for-PyTorch

In-depth tutorials for implementing deep learning models on your own with PyTorch.

martinleach/DISMIR

martinleach/DMS_opt

martinleach/DnaChisel

:pencil2: A versatile DNA sequence optimizer

martinleach/DnaFeaturesViewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

martinleach/ete

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.

martinleach/GeneGPT

Code and data for GeneGPT.

martinleach/guppy_on_slurm

Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

martinleach/igblast

Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python

martinleach/jetson_nanopore_sequencing

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

martinleach/Job-Description-Parser

Using spaCy (an NLP library) I created a custom project for semantic analysis and custom rule-matcher for Job Descriptions/ Resumes.

martinleach/logomaker

Software for the visualization of sequence-function relationships

martinleach/mdb-ui-kit

Bootstrap 5 & Material Design 2.0 UI KIT

martinleach/myvariantviewer

A JBrowse plugin for viewing info from mygene.info and myvariant.info

martinleach/ncbi-vdb

ncbi-vdb

martinleach/ner_youtube

martinleach/pistoiahelm.github.com

Community stuff – currently including release notes, but more coming soon.

martinleach/python_tutorials

This repository hosts Python code snippets and Jupyter notebooks

martinleach/ResumeParser

A framework to parse resumes, extract contact & other information, and check for required terms

martinleach/simple-smartsheet

Python library to interact with smartsheets

martinleach/SkillsExtractorCognitiveSearch

Azure Search Cognitive Skill to extract technical and business skills from text