martynakgajos/PolII_pausing_detection

Peak caller designed for detecting PolII pausing sites

applicable for peak detection in sparse genomic data

Requirements: Snakemake, numpy, pandas, statsmodels, scipy, pybedtools

Cite as: Gajos, M., Jasnovidova, O., van Bömmel, A., Freier, S., Vingron, M., & Mayer, A. (2021). Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic Acids Research, 49(8), 4402–4420.