Pinned Repositories
3DRootSegmentation
Root segmentation of X-ray computed tomography images of container horticultural plants using Mask R-CNN and DBSCAN-based 3D point cloud clustering
B-SOID
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
bams
PyTorch implementation of BAMS (https://multiscale-behavior.github.io/)
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
DLC
Embeddings
Notebooks to explore and understand embeddings.
fslp-led-strip-arduino-demo
Example Arduino sketch that shows how to use an Interlink force-sensing linear potentiometer (FSLP) to control an addressable RGB LED strip.
image-transform
resize images while maintaining image center and aspect ratio, also transforms corresponding coco annotations
PoseEmbeddingsExplore
Project to explore embeddings of pose data... in progress!
Practice
marybethcassity's Repositories
marybethcassity/3DRootSegmentation
Root segmentation of X-ray computed tomography images of container horticultural plants using Mask R-CNN and DBSCAN-based 3D point cloud clustering
marybethcassity/image-transform
resize images while maintaining image center and aspect ratio, also transforms corresponding coco annotations
marybethcassity/B-SOID
Behavioral segmentation of open field in DeepLabCut, or B-SOID ("B-side"), is a pipeline that pairs unsupervised pattern recognition with supervised classification to achieve fast predictions of behaviors that are not predefined by users.
marybethcassity/bams
PyTorch implementation of BAMS (https://multiscale-behavior.github.io/)
marybethcassity/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
marybethcassity/DLC
marybethcassity/Embeddings
Notebooks to explore and understand embeddings.
marybethcassity/fslp-led-strip-arduino-demo
Example Arduino sketch that shows how to use an Interlink force-sensing linear potentiometer (FSLP) to control an addressable RGB LED strip.
marybethcassity/PoseEmbeddingsExplore
Project to explore embeddings of pose data... in progress!
marybethcassity/Practice
marybethcassity/plantcv
Plant phenotyping with image analysis
marybethcassity/StereoHopPhenotyping
High-throughput phenotyping of Humulus lupulus in greenhouse using stereo vision, semantic segmentation, and 3D point clouds
marybethcassity/VisualStream