Pinned Repositories
dotfiles
mag
Assembly and binning of metagenomes
molkart
A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
monorepo-minimal
Created with StackBlitz ⚡️
mashehu's Repositories
mashehu/dotfiles
mashehu/mag
Assembly and binning of metagenomes
mashehu/molkart
A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)
mashehu/actions-runners
Instructions and scripts for custom GitHub Actions runners
mashehu/astropub-md
Render any Markdown content in Astro, optionally integrating with any existing configuration.
mashehu/blueskyfeedbot
A bot that posts RSS feeds to Bluesky via GitHub Actions
mashehu/createtaxdb
Parallelised and automated construction of metagenomic classifier databases of different tools
mashehu/crisprseq
A pipeline for the analysis of CRISPR edited next generation sequencing (NGS) data. CRISPR gene knockouts (KO), CRISPR knock-ins (KI), base editing (BE) and prime editing (PE) experiments
mashehu/css-framework-party
Created with StackBlitz ⚡️
mashehu/deepmodeloptim
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
mashehu/demo
nf-core/demo is a simple nf-core style bioinformatics pipeline for workshops and demos.
mashehu/detect-nf-test-changes
Identify changes in Nextflow repo for CI testing
mashehu/docs
Astro documentation
mashehu/genomeassembler
mashehu/hackathon
All about the nf-core hackathons
mashehu/mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
mashehu/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
mashehu/nf-co.re
Files for the main nf-core website >>>
mashehu/nf-schema-builder
mashehu/ops
mashehu/repo2rocrate
Generate a Workflow RO-Crate from a best-practice workflow repository
mashehu/rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
mashehu/ro-crate-py
Python library for RO-Crate
mashehu/schema-spec
Specification of Nextflow schema
mashehu/setup-nextflow
mashehu/setup-nf-test
Github Action to use nf-test in CI
mashehu/smrnaseq
A small-RNA sequencing analysis pipeline
mashehu/stats
mashehu/tools
Python package with helper tools for the nf-core community.
mashehu/training
Nextflow training material