mastodon-sc/mastodon

MaMuT-like feature requests.

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Behaviour to implement.

  • Jump between cell divisions with “v" (forward) and “b" (backwards) - in already traced cell lineages.
  • Selection behaviours to select
    • a whole track
    • track upward in time
    • track downward in time
      from a selection.

Action framework.

  • Generate missing spots across a gap over several frames by interpolating new spot positions.
  • Automatic cell naming within tracks. To complete this one, we require a documented naming scheme.

Feature framework.

  • Maintain a set of manual labels (10 or so) for each spot. Should be manually editable, ideally a bit like an enum type (you can have 1000 cells but their 'state' label has only 5 values).
  • Generate spot colouring from feature.
  • Store, make editable and display a manual color for spots.

The remainder of this issue will be managed in a github project.