matbeale
Molecular and Computational Biologist, working on infectious disease genomics and epidemiology.
Wellcome Sanger InstituteUnited Kingdom
Pinned Repositories
Contemporary_Syphilis_Lineages_2021
2021 Analysis of Global Treponema pallidum subspecies pallidum genomic diversity, distribution and lineage dynamics.
Global_Syphilis_Phylo_2019
Scripts and Source data from 2019 Global Syphilis Phylogenomics and Macrolide resistance project
HSV1_recombination_selective_constraints
Raw data and code from Lassalle, Beale, et al "Whole genome sequencing of Herpes Simplex Virus 1 directly from cerebrospinal fluid reveals selective constraints in neurotropic viruses"
Lihir_Treponema_2020
Novel scripts for analysis of Treponema pallidum genomes from Lihir, Papua New Guinea (Beale 2020)
Syphilis_Genomic_Epi_England_2012-2018
Genomic and epidemiological analysis of Treponema pallidum genomes from UK (English) patients, 2012-2018.
GenEpiLAC2023
Learn how to apply genomics to epidemiological surveillance of bacterial pathogens and public health in Latin America
GenEpiLAC2024
Learn how to apply genomics to epidemiological surveillance of bacterial pathogens and public health in Latin America.
matbeale's Repositories
matbeale/Contemporary_Syphilis_Lineages_2021
2021 Analysis of Global Treponema pallidum subspecies pallidum genomic diversity, distribution and lineage dynamics.
matbeale/Global_Syphilis_Phylo_2019
Scripts and Source data from 2019 Global Syphilis Phylogenomics and Macrolide resistance project
matbeale/HSV1_recombination_selective_constraints
Raw data and code from Lassalle, Beale, et al "Whole genome sequencing of Herpes Simplex Virus 1 directly from cerebrospinal fluid reveals selective constraints in neurotropic viruses"
matbeale/Lihir_Treponema_2020
Novel scripts for analysis of Treponema pallidum genomes from Lihir, Papua New Guinea (Beale 2020)
matbeale/Syphilis_Genomic_Epi_England_2012-2018
Genomic and epidemiological analysis of Treponema pallidum genomes from UK (English) patients, 2012-2018.