ndreg
NeuroData's registration library, built in python using ITK
Submit bug reports here.
Installation
Easy way
The easiest way to use ndreg is through docker
Hard way
More advanced users can build ndreg from scratch
Installating dependances on Ubuntu 16.04 and later
- Install dependancies
sudo apt-get -y install cmake python-numpy libinsighttoolkit4-dev libfftw3-dev- Proceded to Installing ndreg
Installing dependances other linux distributions
- Build and install ITK 4.10.0 or later
itkVersion=4.10.0
itkMinorVersion=`echo ${itkVersion} | cut -d'.' -f 1,2`
mkdir itk; cd itk
wget https://sourceforge.net/projects/itk/files/itk/${itkMinorVersion}/InsightToolkit-${itkVersion}.tar.gz
tar -vxzf InsightToolkit-${itkVersion}.tar.gz
mv InsightToolkit-${itkVersion} src/
mkdir bin; cd bin
cmake -G "Unix Makefiles" -DITK_USE_SYSTEM_FFTW=OFF -DITK_USE_FFTWD=ON -DITK_USE_FFTWF=ON -DModule_ITKReview=ON ../src
make && sudo make install-
For Ubuntu 15.10 and earlier
-
Install dependances
sudo apt-get -y install cmake-
Proceded to Installing ndreg
-
For Centos 6.7 and later
-
Install dependances
sudo yum -y install libjpeg-devel cmake
sudo /usr/local/bin/pip install --trusted-host www.simpleitk.org -f http://www.simpleitk.org/SimpleITK/resources/software.html SimpleITK
sudo /usr/local/bin/pip install blosc==1.3.0- Proceded to Installing ndreg
Installing ndreg
git clone https://github.com/neurodata/ndreg.git
cd ndreg
cmake .
make && sudo make install