matiasgoco
I am a coral reef ecologist and molecular evolutionary biologist from Colombia, specializing in coral conservation and evolution within the Caribbean.
Nova Southeastern universityDania Beach, FL
Pinned Repositories
2bRAD_denovo
Genome-wide de novo genotyping with 2bRAD
2bRAD_utilities
A collection of scripts for analyzing 2bRAD genotyping data.
adegenet
adegenet: a R package for the multivariate analysis of genetic markers
apoptosis_data_pipeline
This repository houses the pipeline I coded to perform differential analysis of transcriptomes from two oyster species, C. gigas and C. virginica and isolate genes in the apoptosis pathway.
beast2
Bayesian Evolutionary Analysis by Sampling Trees
beast2_constsites
Update your BEAST2 XML to account for constant sites
bedops
:microscope: BEDOPS: high-performance genomic feature operations
Belize_Mcav_Symbiodiniaceae_ITS2
Symbiodinium spp. DNA extraction & amplification protocols and bioinformatic pipelines
BigDataAnalysis19
matiasgoco's Repositories
matiasgoco/2bRAD_utilities
A collection of scripts for analyzing 2bRAD genotyping data.
matiasgoco/beast2
Bayesian Evolutionary Analysis by Sampling Trees
matiasgoco/Belize_Mcav_Symbiodiniaceae_ITS2
Symbiodinium spp. DNA extraction & amplification protocols and bioinformatic pipelines
matiasgoco/biocore_documentation
Central repo for all non-project-specific documentation. Includes biocore best practices and guidelines.
matiasgoco/cubaMcavMsatSnp
matiasgoco/dadi_pipeline
An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting goodness of fit tests, and plotting.
matiasgoco/Dsuite
Fast calculation of Paterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
matiasgoco/genomics_general
General tools for genomic analyses.
matiasgoco/gghybrid
R package for analysis of hybrids and hybrid zones
matiasgoco/Gomez-Corrales-Prada_Mol_Eco_2020
Code and files needed to reproduce analyses in the associated publication (10.1111/mec.15631,https://doi.org/10.5061/dryad.9kd51c5f3)
matiasgoco/ipyrad
Interactive assembly and analysis of RAD-seq data sets
matiasgoco/lcwgs-guide-tutorial
matiasgoco/matiasgoco.github.io
Notebook of a PhD student in Prada`s Lab
matiasgoco/nested-sampling
Nested sampling packagin for BEAST
matiasgoco/ngsTools
Programs to analyse NGS data for population genetics purposes
matiasgoco/Papers
matiasgoco/physalia-lcwgs
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 19-22 2020
matiasgoco/Pipette-Guide-96
Making you hate normalization from 96-well plates less.
matiasgoco/PolyVCF
Estimates nucleotide diversity on sliding windows from a VCF file
matiasgoco/PopGenomicsTools
Programs for performing various population genetic analyses
matiasgoco/PPP-Lab-Resources
Resources, protocols, recipes, etc for the Puritz, Prada, and Putnam Labs at the University of Rhode Island
matiasgoco/raxml-ng
RAxML Next Generation: faster, easier-to-use and more flexible
matiasgoco/reticulate
R Interface to Python
matiasgoco/scripts
Scripts for analysis used during the course
matiasgoco/SNAPP
A package for BEAST2 implementing SNAPP
matiasgoco/snapp_prep
Prepare XML input files for divergence-time estimation with SNAPP
matiasgoco/Species_Delimitation_2021_08
Materials for the virtual Species Delimitation workshop, held August 16-20, 2021
matiasgoco/SpeciesDelimitationTabularAcropora
Scripts and data repository for the submitted manuscript: C. RamĂrez-Portilla, A. H. Baird, P. F. Cowman, A. M. Quattrini, S. Harii, F. Sinniger, J. F. Flot, Solving the coral species conundrum (2021)
matiasgoco/SVDquest
matiasgoco/tetrad
Phylogenetic inference using phylogenetic invariants and quartet joining