matsengrp/gp-benchmark-1-environment

Code to explore to what extent GP composite likelihoods and their derivatives correspond to more well-understood quantities

gp-benchmark-1-environment

Dependencies

We assume that this will be run in the bito conda environment.

Python dependencies will be installed via pip with the command below. We also require:

• MrBayes
• Newick utilities
• spr_neighbors
• GNU Parallel

Please see Dockerfile for complete install details.

Install

pip install -e .