matteocereda
M.Eng. Ph.D. | Bioinfo | Associate Professor @ University of Milan "La Statale" | Group Leader @ Italian Institute for Genomic Medicine (IIGM)
University of Milan and IIGMMilan, IT
Pinned Repositories
AI
BWA_GATK_Mutect
Pipeline for mutation calling using MuTect
ceredaR
ClonalEvolution_tutorial
Tumor Clonal Evolution
EMBO_SBC_hackathon
The spatial biology of cancer - Hackathon
FOXA1_public
GSECA
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
PERALTA
IIGM HPC
proliferation_assay
This is a R Shiny application to visualise proliferation curves
RNAmotifs
RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins
matteocereda's Repositories
matteocereda/RNAmotifs
RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins
matteocereda/GSECA
Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data
matteocereda/EMBO_SBC_hackathon
The spatial biology of cancer - Hackathon
matteocereda/AI
matteocereda/ceredaR
matteocereda/FOXA1_public
matteocereda/PERALTA
IIGM HPC
matteocereda/proliferation_assay
This is a R Shiny application to visualise proliferation curves
matteocereda/BWA_GATK_Mutect
Pipeline for mutation calling using MuTect
matteocereda/ClonalEvolution_tutorial
Tumor Clonal Evolution
matteocereda/FPO
matteocereda/novoalinToMutect
How to run Mutect using Novoaling as aligner
matteocereda/Rotolo_et_al_2022
matteocereda/KRASG12C-LUAD
RAS(ON) inhibition overcomes clinical resistance to KRAS G12C(OFF) covalent blockade by Nokin MJ, Mira A et al.
matteocereda/sc_datasets
matteocereda/STAG
matteocereda/strelka
Strelka2 germline and somatic small variant caller