matteoferla

Computational biochemist in University of Oxford OPIG/XChem groups

University of OxfordOxford, United Kingdom

Pinned Repositories

DirEvo_tools
The new and improved server combining Pedel, Mutanalyst and much more
Language:Mako4 3 41
DnD-battler
A 5e D&D encounter simulator written for my own amusement to test some hypotheses.
Language:Python80 14 1131
Fragmenstein
Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse
Language:Python181 6 3813
Fragment-hit-follow-up-chemistry
A collection of notebooks and scripts for the prediction of follow-up compounds in
Language:Jupyter Notebook10 2 00
Michelanglo-and-Venus
Topmost repository for the Michelanglo webapp, including the Venus functionality.
Language:Shell3 3 02
MichelaNGLo-app
A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site
Language:Mako25 5 24
molecular_rectifier
Given an RDKit molecule that does not sanitise, correct it until it does
Language:Python36 4 27
pyrosetta-help
Some scripts that I keep using over and over.
Language:Python18 3 37
Python_SmallWorld_API
An (unofficial) Python3 module to query the SmallWorld chemical space search server (https://sw.docking.org/search.html)
Language:Python35 5 54
rdkit_to_params
Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file
Language:Python27 3 25

matteoferla/PrettyFastaJS
Script to embed in a pretty way a fasta file in a website, such as blog
Language:JavaScript1 3 0
matteoferla/Geobacillus
Genomic and transcriptomic data on Geobacillus thermoglucosidasius
Language:HTML
matteoferla/Perly-scripts
A very very large amount of scripts in Perl
Language:Perl
matteoferla/pyoverdine
Language:Python
matteoferla/snippets
Language:Python