matthpich

matthpich's Stars

• saketkc/pysradb

  Package for fetching metadata and downloading data from SRA/ENA/GEO

  Language:Python31752

• segrelab/comets

  Computation of Microbial Ecosystems in Time and Space

  Language:Java2110

• biocore/gemelli

  Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.

  Language:Python7717

• nglviewer/nglview

  Jupyter widget to interactively view molecular structures and trajectories

  Language:Jupyter Notebook834134

• jorvis/biocode

  Bioinformatics code libraries and scripts

  Language:Python507248

• bioconvert/bioconvert

  Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

  Language:Python37144

• eggnogdb/eggnog-mapper

  Fast genome-wide functional annotation through orthology assignment

  Language:Python579106

• motu-tool/fetchMGs.pl

  Language:Perl162

• kodecocodes/flta-materials

  The projects and the materials that accompany the Flutter Apprentice book

  Language:Dart2.4k1.3k

• auth0-blog/flutter-authentication

  Get Started with Flutter Authentication

  Language:Dart6559

• rclone/rclone

  "rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Azure Blob, Azure Files, Yandex Files

  Language:Go48k4.3k

• benhoyt/dhash

  Python library to calculate the difference hash (perceptual hash) for a given image, useful for detecting duplicates

  Language:Python36238

• voila-dashboards/voila

  Voilà turns Jupyter notebooks into standalone web applications

  Language:Python5.5k506

• lmcinnes/umap

  Uniform Manifold Approximation and Projection

  Language:Python7.6k811

• aws-samples/aws-genomics-workflows

  Genomics Workflows on AWS

  Language:Shell145110

• kellylab/microbeFDT-neo4j

  microbeFDT-neo4j

  43

• alimanfoo/pysamstats

  A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.

  Language:Python19343

• torognes/vsearch

  Versatile open-source tool for microbiome analysis

  Language:C++685124

• CAMI-challenge/CAMISIM

  CAMISIM: Simulating metagenomes and microbial communities

  Language:Python18637

• junegunn/vim-plug

  :hibiscus: Minimalist Vim Plugin Manager

  Language:Vim Script34.4k1.9k

• montilab/pipeliner

  A flexible Nextflow-based framework for the definition of sequencing data processing pipelines

  Language:Nextflow4413

• waldronlab/cBioPortalData

  Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

  Language:R3113

• soedinglab/MMseqs2

  MMseqs2: ultra fast and sensitive search and clustering suite

  Language:C1.5k203

• knights-lab/shi7

  Auto-parameterizing QC Pipeline for Illumina sequencing runs

  Language:Python177

• bovee/fattyacids

  Microbial fatty acid compositions

  Language:Python41

• knights-lab/BURST

  An ultrafast optimal aligner for mapping large NGS data to large genome databases.

  Language:C579

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python970173