Pinned Repositories
biasviz
BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.
bioconda-recipes
Conda recipes for the bioconda channel.
cmbr2
CMB R Scripts
conda-move
Move environments from an existing conda installation to another directory
dataserver
Zotero Data Server
transit
Science Hack Day Berlin 2015: Physical Transit Visualization
tRap
R package implementing the TRAP method to predict transcription factor binding affinity to DNA sequences
tree-sitter-nextflow
Tree sitter parser for nextflow
matthuska's Repositories
matthuska/conda-move
Move environments from an existing conda installation to another directory
matthuska/tRap
R package implementing the TRAP method to predict transcription factor binding affinity to DNA sequences
matthuska/tree-sitter-nextflow
Tree sitter parser for nextflow
matthuska/transit
Science Hack Day Berlin 2015: Physical Transit Visualization
matthuska/biasviz
BiasViz is a Java applet for visualization of amino acid bias in multiple sequence alignments.
matthuska/bioconda-recipes
Conda recipes for the bioconda channel.
matthuska/dataserver
Zotero Data Server
matthuska/dot-nvim
My ~/.config/nvim directory
matthuska/dot-vim
My .vim directory
matthuska/high_res
High Res was a nice theme for Tumblr.
matthuska/jenkins-test
A tiny test repo for testing out Jenkins
matthuska/motifcounter
matthuska/MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
matthuska/nvim-minimal-tree-sitter
A minimal neovim config for installing a custom tree-sitter parser
matthuska/nvim-nvchad
My neovim setup using NvChad
matthuska/obsidian-templates
My Obsidian templates. Hopefully up to date, probably not.
matthuska/poreCov
SARS-CoV-2 workflow for nanopore sequence data
matthuska/predict-nmi
Predict non-methylated genomic regions by training a spectrum kernel SVM on known non-methylated regions
matthuska/pubmed2html
Command line tool to do a PubMed query and return the results as nicely formatted HTML
matthuska/pywfa
Python wrapper for wavefront alignment using WFA2-lib
matthuska/r-optparse
R package providing a commandline optional argument parser
matthuska/smfc-x9sci
Super Micro Fan Control (fork to work with X9SCI)
matthuska/snakesrt
Sort rule parameters in Snakemake files
matthuska/tout
A script to measure and limit CPU time and memory consumption of black-box processes in Linux
matthuska/tree-sitter-nextflow-config
Nextflow config file grammar for tree-sitter
matthuska/tree-sitter-snakemake
Snakemake grammar for tree-sitter
matthuska/tumblr-photoblog
Tumblr Photoblog Tools
matthuska/Zoo-For-Zotero
This is an Android app for viewing Zotero libraries.
matthuska/zotero
Zotero is a free, easy-to-use tool to help you collect, organize, cite, and share your research sources.
matthuska/ztpi
STATE Festival Berlin 2014: Time Bureau