matuskalas
Open (science|source|data|organisation|access|society) Interoperability, efficiency, accessibility, reliability, etc. of scientific software & services
University of BergenBergen, Norway
Pinned Repositories
biotoolsSchema
biotoolsSchema : Tool description data model for computational tools in life sciences
edam-bioimaging
Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..
edam-browser
Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies
edam-popovers
A Firefox & Chrome extension that displays detailed information about EDAM concepts
edamontology
EDAM is a domain ontology of data analysis and data management in bio- and other sciences, and science-based applications. It comprises concepts related to analysis, modelling, optimisation, and data life cycle. Targetting usability by diverse users, EDAM's structure is relatively simple, divided into 4 sections: Topic, Operation, Data, and Format.
24-ToolsMetadata
git-intro
Introduction to version control with Git.
learning-resources
Provides online material and tutorials for modern C++, efficient data structures and algorithms.
reproducible-research
Lesson on reproducible research.
content
A metadata commons to store research software metadata
matuskalas's Repositories
matuskalas/all-contributors
✨ Recognize all contributors, not just the ones who push code ✨
matuskalas/application-forms
repo for application form templates
matuskalas/bh2023-fairimage-preprint
matuskalas/BioHackEU23_preprint
Template for the report on project 32 from the BioHackathon Europe 2023 event - Barcelona, November 2023
matuskalas/content
Experimental repo of bio.tools content for augmentation with other sources of tool information
matuskalas/core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
matuskalas/curly-robot
pok
matuskalas/edam-browser
Stand alone js browser for EDAM Ontology
matuskalas/edam-full-template
This is a template for creating shared "forks" of the full EDAM ontology, with purpose of collaboratively developing community extensions of EDAM.
matuskalas/edam2json-js
Javascript library to convert EDAM to JSON/JSON-LD
matuskalas/environmental_impact
Environmental Impact
matuskalas/fluffy-sniffle
Test repo
matuskalas/galaxy_tool_metadata_extractor
matuskalas/git-novice
Version Control with Git
matuskalas/intro_python_ismb2022
matuskalas/nordicesmhub.github.io
Information about the Nordic Earth System Modeling (ESM) organisation
matuskalas/openrefine-workshop
matuskalas/plaanets
matuskalas/planets2
Exercise repo for SWC
matuskalas/pok
this is a test
matuskalas/pok-from-template
Test
matuskalas/repro-exercise-word-count-project
CodeRefinery exercise repo for reproducible project (word count, Zipf's law)
matuskalas/sdg-strings
SDG search strings
matuskalas/social-coding
Talk about social coding and open software.
matuskalas/synthetic-health-data-generator
matuskalas/TeSS
Training e-Support Service using Ruby on Rails.
matuskalas/test-citation
A test repo to test the implications of including a CITATION, CITATION.bib, or CITATION.cff file, in particular what GitHub and Zenodo do with it.
matuskalas/training-material
A collection of Galaxy-related training material
matuskalas/word-count
Read the Docs exercise from CodeRefinery
matuskalas/word-count-repro
Reproducibility exercise CodeRefinery 2021-05