PHLeGrA - Linked Graph Analytics in Pharmacology
Order of the scripts to run (These scripts also include the FAERS preprocessing steps):
- drug-network.py
- parseFAERS.py
- drug-term.py
- reaction-term.py reaction
- reaction-term.py indication
- reaction-mapper.py reaction
- reaction-mapper.py indication
- build_dataset.py
- generate_counts.py #1-1 and 2-1 counts
Requires:
- NetworkX
- Hydra-Python
- RDFLib
- NumPy
- SciPy