To read the current HTML version, visit: https://maurosilber.github.io/simbio-paper
The following instructions assume you have cloned the repository
git clone https://github.com/maurosilber/simbio-paper
and are inside the simbio-paper
directory.
To run the benchmarking code and compile the article, you must install some dependencies.
If you have conda
installed,
create an environment from the included environment.yml
file:
conda env create
and install the Python package included in the repository:
pip install -e .
To compile the article, you must also install Quarto: https://quarto.org
make
Note: as
src/perfomance/figures/performance.png
was commited to the repository, the benchmarking code is not actually triggered by the Makefile. Remove that file to re-run the benchmarks withmake
.