Pinned Repositories
Big-BWT
modified from gitlab.com/manzai/Big-BWT to support fasta files
colored-strings-miner
Mine unique patterns in colored strings.
dynamic-RMQ
Dynamic array supporting Range Minimum Queries
moni
MONI: A Pangenomic Index for Finding MEMs
moni-align
A Read Aligner with Multi-Genome References
pfp-cst
A compress suffix array built on prefix-free parsing.
pfp-data-structures
Prefix-Free Parsing data structures
pfp-thresholds
Computing thresholds from Prefix-free parsing
phantom-file-system
With this file system, you are able to navigate what is not physically reachable anymore (already detached mountable data storages)
r-index
An optimal space run-length Burrows-Wheeler transform full-text index
maxrossi91's Repositories
maxrossi91/moni
MONI: A Pangenomic Index for Finding MEMs
maxrossi91/pfp-data-structures
Prefix-Free Parsing data structures
maxrossi91/pfp-cst
A compress suffix array built on prefix-free parsing.
maxrossi91/dynamic-RMQ
Dynamic array supporting Range Minimum Queries
maxrossi91/moni-align
A Read Aligner with Multi-Genome References
maxrossi91/r-index
An optimal space run-length Burrows-Wheeler transform full-text index
maxrossi91/pfp-thresholds
Computing thresholds from Prefix-free parsing
maxrossi91/Big-BWT
modified from gitlab.com/manzai/Big-BWT to support fasta files
maxrossi91/colored-strings-miner
Mine unique patterns in colored strings.
maxrossi91/phantom-file-system
With this file system, you are able to navigate what is not physically reachable anymore (already detached mountable data storages)
maxrossi91/r-index-rs
r-index implementation in Rust
maxrossi91/ShapedSlp
SLP encodings that support substring extraction
maxrossi91/2-SAT_to_reachibility
Solve a 2 SAT instance using the 2-coloring problem in Turingarena
maxrossi91/academicons
An icon font for academics
maxrossi91/AMR_expression_analysis
Differential expression exploratory analysis for AMR genes.
maxrossi91/BT-CST
maxrossi91/dynamic-b-tree-bit-vector
maxrossi91/faster-minuter
Wavelet tree based on a fixed block boosting technique
maxrossi91/levioSAM
Lift-over alignments from variant-aware references
maxrossi91/leviosam2
Fast and accurate coordinate conversion between assemblies
maxrossi91/maxrossi91-zsh-theme
My zsh theme
maxrossi91/mum-phinder
Computing matching statistics with compressed data structures
maxrossi91/personal-website
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
maxrossi91/pfp
maxrossi91/pfp-cst_app_example
Mock example on how to use the PFP-CST
maxrossi91/rlbwt2lcp
Compute minimum LCP value for each BWT equal-letter run
maxrossi91/rlpbwt
maxrossi91/Rmapper
Optical map assembly software
maxrossi91/sdsl-lite
Succinct Data Structure Library 3.0 (unstable, prerelease)
maxrossi91/vcf-bench
evaluating vcf parsing libraries