maxschelski
Neuroscientist. Developing mathematical models of cell biology. Coding Python. PhD Student @ Bradke Lab.
Bonn, Germany
Pinned Repositories
cytostoch
Stochastic simulation (SSA) of cytoskeleton, implemented using CUDA JIT from numba for fast parallel processing on a GPU. Intended for microtubules in neurites, but is much more flexible.
figureflow
Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.
livecellreg
Correlation-based registration of 2D & 3D live cell imaging movies in x, y and z axis.
maxschelski
neuritemt
Package to analyze microtubule orientation in neurons based on output of utrack/plustiptracker.
pyneurite
A computer vision package that traces and analyzes neurites in time-lapse videos fully automated.
pytorch-cluster-metrics
Pytorch implementation of standard metrics for clustering
maxschelski's Repositories
maxschelski/figureflow
Fast, modular and reproducible generation of publication quality scientific figures and movies with only a few lines of code.
maxschelski/pytorch-cluster-metrics
Pytorch implementation of standard metrics for clustering
maxschelski/cytostoch
Stochastic simulation (SSA) of cytoskeleton, implemented using CUDA JIT from numba for fast parallel processing on a GPU. Intended for microtubules in neurites, but is much more flexible.
maxschelski/livecellreg
Correlation-based registration of 2D & 3D live cell imaging movies in x, y and z axis.
maxschelski/maxschelski
maxschelski/neuritemt
Package to analyze microtubule orientation in neurons based on output of utrack/plustiptracker.
maxschelski/pyneurite
A computer vision package that traces and analyzes neurites in time-lapse videos fully automated.