mbassalbioinformatics

Pinned Repositories

fst-pso
A settings-free global optimization method based on PSO and fuzzy logic
Language:Python38 6 2122
mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
Language:Python64 5 6611
pararead
Simplifies parallel processing of DNA sequencing reads
Language:Python9 7 192
pepatac
A modular, containerized pipeline for ATAC-seq data processing
Language:R54 22 24815
FuzzyTM
Fuzzy Topic Models
Language:Python26 1 46
ChIP-AP
An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
Language:Python21 2 1811
ChIP-AP
An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
Language:Python1 0 00
CnRAP
Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.
Language:Python186
spyder
Official repository for Spyder - The Scientific Python Development Environment
Language:Python8.4k 293 18.8k1.6k
mousipy
Translates an AnnData object with mouse gene symbols into one with human gene symbols by mapping orthologs from biomart.
Language:Jupyter Notebook18 3 75

mbassalbioinformatics's Repositories

mbassalbioinformatics/CnRAP
Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.
Language:Python186
mbassalbioinformatics/ChIP-AP
An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis
Language:Python1 0 00