mbergins
Bioinformatician and Biomedical Engineer specializing in data analysis, machine learning and visualization.
Tempus AIChapel Hill, NC
Pinned Repositories
kinase_inhibitor_pred_app
Shiny application for predicting kinase inhibitor effects on cell viability
kinotype_viability
Code related to constructing and testing models for cell viability
PDACperturbations
Data and code associated with pancreatic cancer drug screening and modeling
darkkinasekb
Source code for the dark kinase knowledge base
BerginskiRMisc
Miscellaneous R Functions of General Use in Plotting and Manipulating Data
cell-health
Predicting Cell Health with Morphological Profiles
chemicalprobes
An R package containing the data from chemicalprobes.org
chemKinase
focal_adhesions
Software for the Analysis of Focal Adhesion Images
mbergins's Repositories
mbergins/focal_adhesions
Software for the Analysis of Focal Adhesion Images
mbergins/chemicalprobes
An R package containing the data from chemicalprobes.org
mbergins/BerginskiRMisc
Miscellaneous R Functions of General Use in Plotting and Manipulating Data
mbergins/cell-health
Predicting Cell Health with Morphological Profiles
mbergins/chemKinase
mbergins/CORAL
mbergins/DIC-Edge-Track
Software for segmenting brightfield images to extract migrating cell boundaries
mbergins/dotvim
Vim Configuration Files
mbergins/ECad-analysis
Methods for Analyzing E-Cadherin Fluorescence Images in Drosophila Embryos
mbergins/edge_staining_quantification
MATLAB code to quantify edge staining
mbergins/Embryo-Genes
R shiny application related to displaying mouse transcriptomic data.
mbergins/evd68_humanspinalcord_spatial_transcripts
Shiny application for browsing spatial transcript data
mbergins/EZR_analysis
Code to process Ezrin fluorescence images
mbergins/FRET-Processing
Image Processing Code for Processing FRET images with Focal Adhesion Analysis
mbergins/ggheatmap
Elegant Heatmaps with ggplot2
mbergins/image_processing_misc
image_processing_misc
mbergins/kinase_inhibitor_scSEQ_analysis
mbergins/lincs-cell-painting
Processed Cell Painting Data for the LINCS Drug Repurposing Project
mbergins/mbergins
mbergins/mbergins.github.io
Personal Webpage
mbergins/notifysendR
Code for the notifysendR package
mbergins/ppi_analysis
mbergins/rclass
mbergins/RNAseq_Timelapse_Differentiation
Analysis of RNAseq of several cell lines going through endothetial differentiation
mbergins/rockefelleruniversity.github.io
mbergins/Spark-thermostat
Webapp for using the spark core to control a thermostat
mbergins/vinculin_junctions