mbmaxwell
PhD candidate at UCSD-Salk studying computational biology and cancer immunology.
The University of California, San DiegoLa Jolla, California
Pinned Repositories
TCGA_Gene_Set_Enrichment_Analysis
R code and figure output for TCGA GSEA analysis of ARID1A Mutant vs non-mutant cancers in Figures 2 and 3 from Maxwell et al, 'ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity'.
ARID1A_Cell_code
R codes and shell scripts for core bioinformatic analyses in Maxwell et al, 2024 Cell paper 'ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity '
CD8_scRNA_TCR_seq_analysis
R code and figure output for Figures 2 and S2 from Maxwell et al, 'ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity'.
DepMap_Analysis_of_ARID1A_Mutant_Cancers
Demo with R code and outputs for DepMap analysis of ARID1A mutant cancers, including figure outputs for Figure S7 in Maxwell et al, 2024.
RNA_Seq_Data_Visualization_with_R
Demo on RNA-seq data visualization.
Survival_analyses_with_R
Demo of how to perform univariate and multivariate survival analyses with R.
mbmaxwell's Repositories
mbmaxwell/TCGA_Gene_Set_Enrichment_Analysis
R code and figure output for TCGA GSEA analysis of ARID1A Mutant vs non-mutant cancers in Figures 2 and 3 from Maxwell et al, 'ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity'.
mbmaxwell/ARID1A_Cell_code
R codes and shell scripts for core bioinformatic analyses in Maxwell et al, 2024 Cell paper 'ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity '
mbmaxwell/DepMap_Analysis_of_ARID1A_Mutant_Cancers
Demo with R code and outputs for DepMap analysis of ARID1A mutant cancers, including figure outputs for Figure S7 in Maxwell et al, 2024.
mbmaxwell/CD8_scRNA_TCR_seq_analysis
R code and figure output for Figures 2 and S2 from Maxwell et al, 'ARID1A suppresses R-loop mediated STING-Type I Interferon pathway activation of anti-tumor immunity'.
mbmaxwell/RNA_Seq_Data_Visualization_with_R
Demo on RNA-seq data visualization.
mbmaxwell/Survival_analyses_with_R
Demo of how to perform univariate and multivariate survival analyses with R.