Analysis script for GBM single cell RNA seq data
The cell_ranger matrices used in the paper analysis could be found here.
The cell annotation matrices used in the paper analysis could be found here. Cell annotation are provided as a matlab mat file with the corresponding encoding:
Cell Type | Encoding |
---|---|
Unassigned | 0 |
Mesenchymal | 1 |
Neuronal | 2 |
Astro | 3 |
Progenitor | 4 |
Oligo | 5 |
One of the sample bam file (BT400) is temporary missing in the EGA study EGAS00001004422 and can be found here as long with its index file here.