LSTM-based Tandem Repeat Detector

To run this python code, you must have a Nvidia Video card with CUDA Compute Capability greater than 8.0. You may also need to install the following python packages:

  • pytorch
  • matplotlib
  • biopython
  • numpy

Please be awared that some parameters of the LSTM is changed across the files. Therefore, some pkl files may not fit in to some programs.

The best result is the .py file having the largest number, e.g. test[LARGEST NUMBER]_{some_feature_name}.