mcassatt

@avershinina is the only way I get through the day

UCSC

Pinned Repositories

AdmixTools
Tools test whether admixture occurred and more
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alan
Alignment viewer for linux terminal
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Anacapa
#### Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@ucla.edu), Max Ogden (max@maxogden.com), Lenore Pipes (lpipes@berkeley.edu)and Baochen Shi (biosbc@gmail.com). Assistance was provided by Rachel Meyer (rsmeyer@ucla.edu).
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AntCaller
SNP calling and genotyping for damaged DNA
Language:Python0 1 00
ASTRAL
Accurate Species TRee ALgorithm
Language:Java0 1 00
Augustus
Genome annotation with AUGUSTUS
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bcftools
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
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beagle-lib
general purpose library for evaluating the likelihood of sequence evolution on trees
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Chrom-Compare
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Population_Genomics_Scripts
Scripts of population genomics analysis
Language:Shell1 1 00

mcassatt/GFFutils
Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
Language:Python