McGill Ding Lab

CellAgentChat

Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data

cellar2

Interactive software tool for the assignment of cell types in single-cell studies.

DENetwork

Unveiling Regulatory and Signaling Networks Behind Differentially-Expressed Genes

MATES

A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data

RAMEN

scCross

A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simulation of single-cell multi-omics data. Our model excels at maintaining in-silico perturbations during cross-modality generation and harnessing these perturbations to identify key genes.

scSemiProfiler

A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative model.

scSniper

scSniper: Single-cell Deep Neural Network-basd Identification of Prominent Biomarkers

tbsp

Trajectory Inference Based on SNP information.

UNAGI

Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.

mcgilldinglab/scSemiProfiler

A computational method scSemiProfiler that provides affordable single-cell data for large-scale disease cohorts using deep generative model.

mcgilldinglab/CellAgentChat

Python agent-based model tool for inference, visualization and analysis of cell-cell communication from single-cell data

mcgilldinglab/MATES

A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data

mcgilldinglab/scCross

A Deep Learning-Based Model for the integration, cross-dataset cross-modality generation, self augmentation and matched multi-omics simulation of single-cell multi-omics data. Our model excels at maintaining in-silico perturbations during cross-modality generation and harnessing these perturbations to identify key genes.

mcgilldinglab/UNAGI

Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.

mcgilldinglab/DENetwork

Unveiling Regulatory and Signaling Networks Behind Differentially-Expressed Genes

mcgilldinglab/scSniper

scSniper: Single-cell Deep Neural Network-basd Identification of Prominent Biomarkers

mcgilldinglab/Arsenic_Toxicity_Single-Cell_Multi-Omics_Profiling

mcgilldinglab/cellar2

Interactive software tool for the assignment of cell types in single-cell studies.

mcgilldinglab/RAMEN

mcgilldinglab/scBeacon

mcgilldinglab/tbsp

Trajectory Inference Based on SNP information.

mcgilldinglab/scCobra

mcgilldinglab/single_cell_human_muscle_analysis