Pinned Repositories
AssignPhase
blasr
This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappear at any time.
hgsvg
Analysis code for 1kg
Ideoplot
Simple R script for plotting ideograms and annotating with bed files.
invcheck
mcutils
pbsamstream
phasedsv
Split10x
mchaisso's Repositories
mchaisso/blasr
This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappear at any time.
mchaisso/Ideoplot
Simple R script for plotting ideograms and annotating with bed files.
mchaisso/mcutils
mchaisso/phasedsv
mchaisso/pbsamstream
mchaisso/invcheck
mchaisso/Split10x
mchaisso/hgsvg
Analysis code for 1kg
mchaisso/AssignPhase
mchaisso/bioconda-recipes
Conda recipes for the bioconda channel.
mchaisso/hgsvc
mchaisso/mcpbblasr
BLASR: The PacBio® long read aligner
mchaisso/napu_wf
WDL workflows for variant calling and assembly using ONT
mchaisso/pbgreedyphase
mchaisso/pbmetrics
Various scripts to produce metrics for pacbio data
mchaisso/pbmm2
A minimap2 frontend for PacBio native data formats
mchaisso/recombseq
recombseq webpage
mchaisso/seqtk
Toolkit for processing sequences in FASTA/Q formats
mchaisso/simplegraph
Small exome assembly
mchaisso/test
test
mchaisso/tricycle
mchaisso/UW-ABP
mchaisso/wordcounting