mchen-caris

Pinned Repositories

cerberus
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
Language:Python0 0 00
CLAM
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Language:Python0 0 00
HEST
HEST: Bringing Spatial Transcriptomics and Histopathology together
Language:Python00
HistoBistro
Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
Language:Jupyter Notebook00
HoverFast
Blazing fast nuclei segmentation for brightfield Whole Slide Images
Language:Python0 0 00
instanseg
Language:Jupyter Notebook00
LCSB-MIL
source code of Inter-MIL: self-interactive multi-instance learning
Language:Python0 0 00
MAPS
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
Language:Jupyter Notebook00
marugoto
Tools to build deep learning pipelines.
Language:Python00
MIL-nature-medicine-2019
Language:Python00

mchen-caris's Repositories

mchen-caris/cerberus
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification
Language:Python0 0 00
mchen-caris/CLAM
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Language:Python0 0 00
mchen-caris/HistoBistro
Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
Language:Jupyter Notebook00
mchen-caris/HoverFast
Blazing fast nuclei segmentation for brightfield Whole Slide Images
Language:Python0 0 00
mchen-caris/LCSB-MIL
source code of Inter-MIL: self-interactive multi-instance learning
Language:Python0 0 00
mchen-caris/MAPS
Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
Language:Jupyter Notebook00
mchen-caris/marugoto
Tools to build deep learning pipelines.
Language:Python00
mchen-caris/MIL-nature-medicine-2019
Language:Python00
mchen-caris/PANTHER
Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024
Language:Jupyter Notebook00
mchen-caris/PathoDuet
Language:Python0 0 00
mchen-caris/RetCCL
mchen-caris/tmi2024
Graph attention-based fusion of pathology images and gene expression for prediction of cancer survival
Language:Python0 0
mchen-caris/TransMIL
TransMIL: Transformer based Correlated Multiple Instance Learning for Whole Slide Image Classification
mchen-caris/TransPath