Pinned Repositories
Circuitseq
Nanopore Plasmid Sequencing
custom_barcodes
Generation of custom sequencing barcodes
FlashFry
FlashFry: The rapid CRISPR target site characterization tool
gene111
Notebooks and code for Dartmouth's GENE111 class
gene_146
Code and course material for Gene/QBS 146: Foundations of Bioinformatics I
mckennalab.github.io
the rendered version of the website
SAMToFasta
Convert a SAM and reference files into a paired FASTA alignment file
SciMaul
SCIMaul: A read splitter for single-cell experiments
SingleCellLineage
Updated scripts and pipelines for processing GESTALT data at single-cell resolution
TreeUtils
A simple Scala tool to handle running the PHILIP MIX parsimony program and generating JSON output trees
The McKenna lab's Repositories
mckennalab/FlashFry
FlashFry: The rapid CRISPR target site characterization tool
mckennalab/Circuitseq
Nanopore Plasmid Sequencing
mckennalab/SingleCellLineage
Updated scripts and pipelines for processing GESTALT data at single-cell resolution
mckennalab/TreeUtils
A simple Scala tool to handle running the PHILIP MIX parsimony program and generating JSON output trees
mckennalab/SciMaul
SCIMaul: A read splitter for single-cell experiments
mckennalab/gene_146
Code and course material for Gene/QBS 146: Foundations of Bioinformatics I
mckennalab/custom_barcodes
Generation of custom sequencing barcodes
mckennalab/gene111
Notebooks and code for Dartmouth's GENE111 class
mckennalab/SAMToFasta
Convert a SAM and reference files into a paired FASTA alignment file
mckennalab/clique
Read alignment and collapsing for lineage data
mckennalab/DupScoop
Remove duplicate segments from small, circular genome assemblies
mckennalab/mckennalab.github.io
the rendered version of the website
mckennalab/butcher
A opinionated read trimmer
mckennalab/counterfeiter
simulated lineage trees with cell patterning options
mckennalab/COVID_scheduler
auto-schedule people for COVID lab access
mckennalab/editing_plots
split out the editing plots to refactor them
mckennalab/hugo_academic_website
the templated version of the website
mckennalab/NextLineage
Lineage recorder processing using NextFlow
mckennalab/PennGrader
A seamless in-line Jupyter Notebook autograder.
mckennalab/PhysiCell-Studio-2.26.122
mckennalab/SC_GESTALT
GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing