Pinned Repositories
aegea
Amazon Web Services Operator Interface
cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
cellranger_clean
10x Cell Ranger Docker Image
cellxgene-rest-api
Rest API layer for cellxgene project
DConvert
dcp-cli
HCA Data Coordination Platform Command Line Interface
dcplib
A library of modules shared among multiple Data Coordination Platform components
hca-hinxton-hackathon
Resources for the Human Cell Atlas hackathon in Hinxton
htslib_dnanexus_plugin
qv_compress
Use vector quantization to compress PacBio quality values.
mckinsel's Repositories
mckinsel/cellranger_clean
10x Cell Ranger Docker Image
mckinsel/htslib_dnanexus_plugin
mckinsel/hca-hinxton-hackathon
Resources for the Human Cell Atlas hackathon in Hinxton
mckinsel/aegea
Amazon Web Services Operator Interface
mckinsel/cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
mckinsel/cellxgene-rest-api
Rest API layer for cellxgene project
mckinsel/DConvert
mckinsel/dcp-cli
HCA Data Coordination Platform Command Line Interface
mckinsel/dcplib
A library of modules shared among multiple Data Coordination Platform components
mckinsel/DeepSheep
mckinsel/dotfiles
mckinsel/dx_test_demo
Continuous integration for DNAnexus applets
mckinsel/dxWDL
Workflow Description Language compiler for the DNAnexus platform
mckinsel/freebayes
Bayesian haplotype-based polymorphism discovery and genotyping.
mckinsel/fusioncatcher
Somatic fusion genes finder for RNA-seq data
mckinsel/hackathon-jupyterhub
mckinsel/hca_jamboree_cell_identification
The Human Cell Atlas Jamboree task 1 and 3. Identifying cells from single-cell RNA-seq droplet data (including removing erroneous molecules and determining dead and damaged cell)
mckinsel/martian
Language and framework for high performance computational pipelines.
mckinsel/NEXUSWORLD-Developer-Workshop
mckinsel/numcodecs
A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.
mckinsel/pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
mckinsel/rstudio
RStudio is an integrated development environment (IDE) for R
mckinsel/sceasy
A package to help convert different single-cell data formats to each other
mckinsel/skylab
Secondary analysis pipelines
mckinsel/smrtpipe_runca
mckinsel/starfish
*fish -- a standardized analysis pipeline for image-based transcriptomics
mckinsel/SwarmSpawner
A spawner for JupyterHub
mckinsel/TENxBrainAnalysis
R scripts for analyzing the 1.3 million brain cell data set from 10X Genomics
mckinsel/tsne
A python wrapper for Barnes-Hut tsne
mckinsel/workflow-execution-service-schemas