mcrewcow
Lead boinformatician in @Baranov-lab, interested in mathematics, integrated transcriptomics data, evo/devo and cancer. Open to new ideas and collaborations
Harvard Medical School / Karolinska InstitutetBoston, MA
Pinned Repositories
ATAC_test
Axolotl_CellChatDB
Building the new species cellchat database
axolotl_JWhited
Collaboration on axolotl project
BaranovLab
Main projects during my current position in Petr Baranov Lab | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
baranovlab.github.io
ChaginLab
Growth Hormone effect on Cartilage Growth Plate; Light-Sheet Microscopy; Pseudocoloring | Projects I started and still working on in Andrei Chagin Lab | Karolinska Institutet
fetal_retina_PODs_Soucy_Kriukov
Pan_et_al_DFChen_IGFPL1_paper
IGFBPL1 Retinal Microglia Project | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
RGC_Dnmt3a_pONC2d_paper
Retinal ganglion cells regeneration in 2 days post optic nerve crush retina | Lydia Tai | Dong Feng Chen Lab collaboration | Schepens Eye Research Institute, Mass General Hospital, Harvard Medical School
Sun_Ye_microglia_macrophages_paper
Socs3/Spp1 Project on Microglia in OIR | Ye Sun Lab Collaboration Project | Boston Children's Hospital
mcrewcow's Repositories
mcrewcow/Axolotl_CellChatDB
Building the new species cellchat database
mcrewcow/mcrewcow.github.io
Website
mcrewcow/Sun_Ye_Photoreceptors
mcrewcow/seq
Some protocols for different seq types (especially for the courses)
mcrewcow/axolotl_JWhited
Collaboration on axolotl project
mcrewcow/Scriabin_projects
mcrewcow/ATAC_test
mcrewcow/scFates
a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.
mcrewcow/functional_sorting_grant_R01
Petr Baranov Lab R01 grant proposal on RGC functional sorting
mcrewcow/starter-hugo-research-group
mcrewcow/pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
mcrewcow/electrontransfer_paper_R
Here is the code for the paper 'Effects of various materials used to promote the direct interspecies electron transfer on anaerobic digestion of low-concentration swine manure'
mcrewcow/myprojects
This folder is for my projects or some code implementations only
mcrewcow/KashinaLab
Here are some codes from Aleksandra Kashina projects
mcrewcow/github-slideshow
A robot powered training repository :robot:
mcrewcow/velocyto.py
RNA velocity estimation in Python