mdbabumiamssm

Biomedical Software Developer! Hematology & Immunology Scientist! Data Science! Single Cell Multi-omics! Icahn School of Medicine! Alum: Indiana University

@mssmManhattan, NYC @USA

Pinned Repositories

anaconda-issues
Anaconda issue tracking
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Articles-on-Machine-Learning
1 1 00
AVi_mssm_enrichr_issues
1 0 00
awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
Language:Python1 0 00
azure--Machine-learning-examples
Official community-driven Azure Machine Learning examples, tested with GitHub Actions.
Language:Jupyter Notebook1 0 00
Babu---openai-cookbook
Examples and guides for using the OpenAI API
Language:MDX1 0 00
Machine-learning-2-months-crash-courses
Những kiến thức cần thiết để học tốt Machine Learning trong vòng 2 tháng. Essential Knowledge for learning Machine Learning in two months.
Language:Jupyter Notebook20
Machine-Learning-Basics-Notebooks
Machine Learning notebooks for refreshing concepts.
Language:Jupyter Notebook20
Machine-learning-resources
The best resources around Machine Learning
Language:HTML20
Machine-learning-tutorial
Machine learning lessons and teaching projects designed for engineers
Language:Jupyter Notebook20

mdbabumiamssm's Repositories

mdbabumiamssm/azure--Machine-learning-examples
Official community-driven Azure Machine Learning examples, tested with GitHub Actions.
Language:Jupyter Notebook1 0 00
mdbabumiamssm/Bulk-RNA-Seq-Troubleshooting
1 1 0
mdbabumiamssm/cellidentifierdx
Language:Python1 1 0
mdbabumiamssm/DNAdamageclassifierDx
Language:Python1 1 0
mdbabumiamssm/GENE-MAPPING
Language:R1
mdbabumiamssm/IBE--Tutorial-NGS-scverse-seurat-others-
Language:Jupyter Notebook1 1 02
mdbabumiamssm/azimuth-
A Shiny web app for mapping datasets using Seurat v4
mdbabumiamssm/biolearn-aging
Machine learning tools for biomarker analysis
Language:Python0 0
mdbabumiamssm/biopython
Official git repository for Biopython (originally converted from CVS)
Language:Python0 0
mdbabumiamssm/celltypist
A tool for semi-automatic cell type classification
mdbabumiamssm/clinvar
ClinVar aggregates information about genomic variation and its relationship to human health.
Language:HTML0 0
mdbabumiamssm/compbio_tutorials
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mdbabumiamssm/Computational-biology-lecturesBI-BE-CS-183-2023
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Language:Jupyter Notebook0 0
mdbabumiamssm/deepsomatic
DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal sequencing data.
0 0
mdbabumiamssm/denoising_mfe
dES: A deep multimodal representation learning approach for denoising energy-based RNA secondary structure prediction and for discovering novel RNA (Draft)
mdbabumiamssm/escape
Easy single cell analysis platform for enrichment
Language:R0 0
mdbabumiamssm/evo
DNA foundation modeling from molecular to genome scale
mdbabumiamssm/FigureOneLab
A running start for your computational biology portfolio.
mdbabumiamssm/GEO-dataset-finder
1 0
mdbabumiamssm/Google-cloud-for-Bioinformatics
GCP for Bioinformatics Researchers
Language:Jupyter Notebook0 0
mdbabumiamssm/grok-XAI
Grok open release
Language:Python0 0
mdbabumiamssm/hra-kg
HRA-KG: Human Reference Atlas Knowledge Graph
mdbabumiamssm/human-scRNA
Language:Jupyter Notebook0 0
mdbabumiamssm/igv-reports
Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.
mdbabumiamssm/omicverse-reproducibility
Reproducibility of results/figures from omicverse paper
mdbabumiamssm/PopV
mdbabumiamssm/shared-workflows
GitHub Action workflows that can be shared by multiple repositories
0 0
mdbabumiamssm/SnapATAC2
Single-cell epigenomics analysis tools
Language:Python0 0
mdbabumiamssm/STAR
RNA-seq aligner
mdbabumiamssm/UXL-foundation
0 0