Pinned Repositories
annotationMaker
Build indexes and annotation files for Nextflow pipelines
ATAC-seq
Nextflow pipeline for ATAC-seq data analysis
ElPiCycle
A R package to learn and stage cell cycle using principal curve
eoulsan
A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)
galaxy
Data intensive science for everyone.
git_workshop
isoseq3
module-5-Methodes-Outils
Méthodes et outils bioinformatiques pour l'analyse des données à haut débit
nf-co.re
Files for the main nf-core website >>>
patchwork
The Composer of ggplots
mdeloger's Repositories
mdeloger/annotationMaker
Build indexes and annotation files for Nextflow pipelines
mdeloger/ATAC-seq
Nextflow pipeline for ATAC-seq data analysis
mdeloger/ElPiCycle
A R package to learn and stage cell cycle using principal curve
mdeloger/eoulsan
A pipeline and a framework for NGS analysis (RNA-Seq and soon Chip-Seq)
mdeloger/galaxy
Data intensive science for everyone.
mdeloger/git_workshop
mdeloger/isoseq3
mdeloger/module-5-Methodes-Outils
Méthodes et outils bioinformatiques pour l'analyse des données à haut débit
mdeloger/nf-co.re
Files for the main nf-core website >>>
mdeloger/patchwork
The Composer of ggplots
mdeloger/readr
Read flat files (csv, tsv, fwf) into R
mdeloger/rna-dge-salmon-deseq2
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
mdeloger/seuratv3wizard
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
mdeloger/shallowHRD
This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination Deficiency of a tumor based on the number of Large-scale Genomic Alterations (LGAs).
mdeloger/SQANTI2
Private repo for Liz's modified SQANTI
mdeloger/test-datasets
mdeloger/toolbox