Pinned Repositories
artscreenEEG
MATLAB repository to perform basic artifact correction and analysis on electroencephalographic (EEG) data
bayesflow_nddms
Repository for fitting Drift-Diffusion models with identifiable within-trial noise parameters in Python using BayesFlow
electroencephalopy
electroencephalopy (EEP) - A repo containing simple Python scripts for EEG analysis using numpy and scipy
encodingN200
Python and JAGS code and data associated with publication, "The latency of a visual evoked potential tracks the onset of decision making" (2019)
ERPIQRT
Individual differences in cognitive abilities are predicted by cortical processing speed: A model-based cognitive neuroscience account
mcntoolbox
The Mathematical Cognitive Neuroscience Toolbox (mcntoolbox). Code associated with the publication "How attention influences perceptual decision making: Single-trial EEG correlates of drift-diffusion model parameters."
PIPS_course
Programming in Psychological Science course. This repository contains materials for a R + Python intro course.
pyhddmjags
Repository for example Hierarchical Drift Diffusion Model (HDDM) code using JAGS in Python. These scripts provide useful examples for using JAGS with pyjags, the JAGS Wiener module, mixture modeling in JAGS, and Bayesian diagnostics in Python.
RPDecision
MATLAB & JAGS Code associated with the paper "Timing of readiness potentials reflect a decision-making process in the human brain" (2020, Computational Brain & Behavior)
sozhfo
Python, MATLAB, and JAGS code associated with the preprint, "Beyond rates: Time-varying dynamics of high frequency oscillations as a biomarker of the seizure onset zone." (2021)
mdnunez's Repositories
mdnunez/pyhddmjags
Repository for example Hierarchical Drift Diffusion Model (HDDM) code using JAGS in Python. These scripts provide useful examples for using JAGS with pyjags, the JAGS Wiener module, mixture modeling in JAGS, and Bayesian diagnostics in Python.
mdnunez/PIPS_course
Programming in Psychological Science course. This repository contains materials for a R + Python intro course.
mdnunez/mcntoolbox
The Mathematical Cognitive Neuroscience Toolbox (mcntoolbox). Code associated with the publication "How attention influences perceptual decision making: Single-trial EEG correlates of drift-diffusion model parameters."
mdnunez/artscreenEEG
MATLAB repository to perform basic artifact correction and analysis on electroencephalographic (EEG) data
mdnunez/bayesflow_nddms
Repository for fitting Drift-Diffusion models with identifiable within-trial noise parameters in Python using BayesFlow
mdnunez/encodingN200
Python and JAGS code and data associated with publication, "The latency of a visual evoked potential tracks the onset of decision making" (2019)
mdnunez/ERPIQRT
Individual differences in cognitive abilities are predicted by cortical processing speed: A model-based cognitive neuroscience account
mdnunez/sozhfo
Python, MATLAB, and JAGS code associated with the preprint, "Beyond rates: Time-varying dynamics of high frequency oscillations as a biomarker of the seizure onset zone." (2021)
mdnunez/electroencephalopy
electroencephalopy (EEP) - A repo containing simple Python scripts for EEG analysis using numpy and scipy
mdnunez/RPDecision
MATLAB & JAGS Code associated with the paper "Timing of readiness potentials reflect a decision-making process in the human brain" (2020, Computational Brain & Behavior)
mdnunez/AMPL_EEG
mdnunez/bayesutils
Utilities for exploration of convergence and graphical posterior estimation of pystan and pyjags output.
mdnunez/CHaRTr
CHaRTr: An R toolbox for modeling Choices and Response Times in decision-making tasks
mdnunez/BayesFlow
A Python library for amortized Bayesian workflows using generative neural networks.
mdnunez/math
Stan Math Library
mdnunez/mne-python
MNE : Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python
mdnunez/NPMK
Neural Processing Matlab Kit is a set of functions for loading and manipulating data from Blackrock Microsystems' data files (.CCF, .NEV, .NSx).
mdnunez/PIPS_class_example
This is a R respository that serves as an example for the PIPS 2022 course at the UvA.
mdnunez/PIPS_class_example2
This is the second example
mdnunez/rcppcnpy
Rcpp bindings for NumPy files
mdnunez/sc-inactivation-project
Code associated with Jun et al. (2021) "Causal role for the primate superior colliculus in the computation of evidence for perceptual decisions"
mdnunez/stan
Stan development repository (home page is linked below). The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
mdnunez/trinity
matlab-trinity