Advanced glycopeptide search on custom dataset generated generated by combining list of peptides (or masses) with list of glycan compositions (or masses)
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Import polyfill:
<script src="bower_components/webcomponentsjs/webcomponents-lite.min.js"></script>
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Import custom element:
<link rel="import" href="bower_components/pepsweetener-advanced-search/pepsweetener-advanced-search.html">
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Start using it!
<pepsweetener-advanced-search></pepsweetener-advanced-search>
| Attribute | Options | Default | Description |
|---|---|---|---|
controller |
object | - | datasource client initialized on creation of new dataset |
masses |
string | `` | query list of masses |
toleranceUnit |
string | ppm | default tolerance unit |
toleranceValue |
number | 10 | default tolerance value |
glycanFilter |
object | {} | object specifying presence and number of particular monosaccharides (optional) |
| Method | Parameters | Returns | Description |
|---|---|---|---|
search() |
None. | Nothing. | Filters masses from the query, submits the search list to pepsweetener-multi-result, |
| | | and executes the query for each mass individually using search controller.
ready() | None. | Nothing. | Sets the elements
In order to run it locally you'll need to fetch some dependencies and a basic server setup.
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$ npm install -g bower polyserve
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Install local dependencies:
$ bower install
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Start development server and open
http://localhost:8080/components/pepsweetener-advanced-search/.$ polyserve