Element generating custom glycopeptide dataset from list of peptides and list of glycans, used as a first step of an advanced search feature.
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Import polyfill:
<script src="bower_components/webcomponentsjs/webcomponents-lite.min.js"></script>
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Import custom element:
<link rel="import" href="bower_components/pepsweetener-dataset-generator/pepsweetener-dataset-generator.html">
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Start using it!
<pepsweetener-dataset-generator></pepsweetener-dataset-generator>
| Attribute | Options | Default | Description |
|---|---|---|---|
peptideInput |
string | `` | type of peptide input: digest or upload |
glycanInput |
string | `` | type of glycan input: unicarbKBNGlycan or unicarbKBAll or upload |
proteinSequence |
string | data binding on protein-digester proteinSequence property | |
peptides |
list | [] | submitted list of peptides |
glycans |
list | [] | submitted list of glycans |
sites |
array | {} | list of sites used to filter peptides in peptide digester |
nSitesFilter |
boolean | {} | if true only N-site motif containing peptides are retained |
oSitesFilter |
boolean | {} | if true only peptides with S or T residues are retained |
fixedModifications |
array | {} | array with definition of selected modifications |
glycopeptides |
array | {} | output glycopeptide dataset |
combinationLimit |
integer | 10000000 | maximum number of combinations |
| Method | Parameters | Returns | Description |
|---|---|---|---|
generate() |
None. | Nothing. | Parses lists of peptides and glycans calls combinePeptidesAndGlycans() |
combinePeptidesAndGlycans() |
None. | Nothing. | Combines submitted peptides and glycans and calculates glycopeptide masses |
In order to run it locally you'll need to fetch some dependencies and a basic server setup.
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$ npm install -g bower polyserve
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Install local dependencies:
$ bower install
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Start development server and open
http://localhost:8080/components/pepsweetener-dataset-generator/.$ polyserve