/aging_in_GTEx_v7

analysis of the age-related changes in GTEx (v7) gene expression data

Primary LanguageR

title author date output
README
Melike
08/08/2019
html_document
 
knitr::opts_chunk$set(echo = TRUE)

Analysing GTEx data for ageing studies

Data

  1. On Aug 8, 2019 the following data are downloaded from GTEx website.
mkdir -p data/raw/
cd data/raw
wget https://storage.googleapis.com/gtex_analysis_v7/annotations/GTEx_Analysis_v7_Annotations_SampleAttributesDD.xlsx
wget https://storage.googleapis.com/gtex_analysis_v7/annotations/GTEx_Analysis_v7_Annotations_SubjectPhenotypesDD.xlsx
wget https://storage.googleapis.com/gtex_analysis_v7/annotations/GTEx_v7_Annotations_SampleAttributesDS.txt
wget https://storage.googleapis.com/gtex_analysis_v7/annotations/GTEx_v7_Annotations_SubjectPhenotypesDS.txt
mkdir expression
cd expression
wget https://storage.googleapis.com/gtex_analysis_v7/rna_seq_data/GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_tpm.gct.gz
gunzip GTEx_Analysis_2016-01-15_v7_RNASeQCv1.1.8_gene_tpm.gct.gz