mdperry's Stars
Functional-Genomics/pancancer
Pancancer related code and aux. data.
ChrisMaherLab/INTEGRATE
ICGC-TCGA-PanCancer/PCAWG-Docker-Test
Scripts to help test Dockstore tools for PCAWG
jpwhalley/PCAWG-QC_Graphs
Code used in producing graphs for the PCAWQ-QC paper
davorg/make-ebook
Simple way to create ebooks from a set of markdown files.
davorg/easy-psgi
bethrobson/Head-First-JavaScript-Programming
konsultaner/jsonOdm
A JSON ODM (object document mapper) for JavaScript to use on the server or in the browser.
davetang/learning_vcf_file
Learning the Variant Call Format
miso-lims/miso-lims
MISO: An open-source LIMS for NGS sequencing centres
CanDIG/images_bakeoff
Test bundling of bwa, picard, and samtools in various image/container formats
NCI-GDC/gdcdictionary
Data dictionary for the GDC
HiDiHlabs/PanCanQC
BD2KGenomics/dcc-redwood-client
etal/cnvkit
Copy number variant detection from targeted DNA sequencing
rhshah/iCallSV
A Framework to call Structural Variants from NGS based datasets
oicr-ibc/heliotrope
ENCODE-DCC/encoded
Metadata database for ENCODE project
dellytools/svprops
Computes various SV statistics
ucscCancer/paradigm-scripts
opencb/genome-maps
An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.
pughlab/tracker
Generic research tracking system
chrisamiller/fishplot
Create timecourse "fish plots" that show changes in the clonal architecture of tumors
vcftools/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
oalders/wundercharts-plugin
WunderCharts Plugins for 3rd Party Web Services
dellytools/delly
DELLY2: Structural variant discovery by integrated paired-end and split-read analysis
tripal/tripal
The Tripal package is a suite of Drupal modules for creating biological (genomic, genetic, breeding) websites. Visit the Tripal homepage at http://tripal.info for documentation, support, and other information. The Drupal project page is at http://drupal.org/project/tripal.
bioperl/bioperl.github.io
The BioPerl Web site: http://bioperl.org
The-Sequence-Ontology/SO-Ontologies
Collect of SO Ontologies
The-Sequence-Ontology/GAL
Genome Annotation Library - A perl toolkit for working with SO compliant genome annotations