Pinned Repositories
.emacs.d
🎉 Personal GNU Emacs configuration
2016-04-06-dib-git-intro
Teaching Demo
2016-04-13-dib-git-intermediate
bassovac
Improved Bayesian inversion somatic caller
biopieces
Automatically exported from code.google.com/p/biopieces
breakdancer
SV detection from paired end reads mapping
BTE
Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit
CL-gentle-intro
Common Lisp: A Gentle Introduction to Symbolic Computation
dcs-bwt-compressor
Automatically exported from code.google.com/p/dcs-bwt-compressor
mdperry's Repositories
mdperry/.emacs.d
🎉 Personal GNU Emacs configuration
mdperry/BTE
Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit
mdperry/CL-gentle-intro
Common Lisp: A Gentle Introduction to Symbolic Computation
mdperry/covid-19-dream
COVID-19 DREAM Challenge
mdperry/cv
Curriculum Vitae
mdperry/data-connect
Standard for describing and searching biomedical data developed by the Global Alliance for Genomics & Health.
mdperry/data-science-from-scratch
code for Data Science From Scratch book
mdperry/data_visualization_examples
People keep asking me in interviews, "Can you create publishable figures?" or "What, _exactly_, was *your* contribution to this paper??"
mdperry/data_wrangling
A collection of possibly useful scripts assembled over a five-and-a-half year period at the modENCODE DCC and two-and-a-half years at the ICGC DCC
mdperry/dive-into-machine-learning
Dive into Machine Learning with Python Jupyter notebook and scikit-learn!
mdperry/DSP_User_Ed
A working space for developing a master vault of template notebooks for DSPs User Ed
mdperry/foundations-for-analytics-with-python
mdperry/HiCPlotter
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
mdperry/json_to_paths
Distill a JSON document into a collection of paths both for 'jq' and 'xpath'
mdperry/linkml
Linked Open Data Modeling Language
mdperry/MakefileViz
graphical representation of makefile targets and their dependencies
mdperry/mint
A pipeline for the integration of DNA methylation and hydroxymethylation data
mdperry/OnCore2REDCap
Perl code from a project for the UCSF HDFCCC
mdperry/org-ref
org-mode modules for citations, cross-references, bibliographies in org-mode and useful bibtex tools to go with it.
mdperry/org-resume
Vitae using org-mode
mdperry/perl
a repo to show what could be p7
mdperry/perl5
🐫The Perl language interpreter.
mdperry/perlweeklychallenge-club
Knowledge base for The Weekly Challenge club members (there is a relatively long list of popular Computer Programming Languages here in the original repo)
mdperry/Regexp-N_Queens
I attended Abigail's talk at The Perl & Raku Conference, 2023 held in Toronto. It was not recorded, and it was also impressive and confusing, so I want to add my comments to the code.
mdperry/snakemake_nextflow_wdl
simple comparison of snakemake, nextflow and cromwell/wdl
mdperry/SQLiteViz
Visualize SQLite3 database schema
mdperry/TAD-fusion-score
mdperry/ucsc_gi_usher
WDL code for the usherPlaceNewSamples workflow that runs on the Terra Cloud Platform (Bioinformatics)
mdperry/xpath2dot
Visualize XML document structure
mdperry/You-Dont-Know-JS
A book series on JavaScript. @YDKJS on twitter.