Pinned Repositories
.emacs.d
🎉 Personal GNU Emacs configuration
2016-04-06-dib-git-intro
Teaching Demo
2016-04-13-dib-git-intermediate
bassovac
Improved Bayesian inversion somatic caller
biopieces
Automatically exported from code.google.com/p/biopieces
breakdancer
SV detection from paired end reads mapping
BTE
Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit
CL-gentle-intro
Common Lisp: A Gentle Introduction to Symbolic Computation
dcs-bwt-compressor
Automatically exported from code.google.com/p/dcs-bwt-compressor
mdperry's Repositories
mdperry/dcs-bwt-compressor
Automatically exported from code.google.com/p/dcs-bwt-compressor
mdperry/2016-04-06-dib-git-intro
Teaching Demo
mdperry/2016-04-13-dib-git-intermediate
mdperry/bassovac
Improved Bayesian inversion somatic caller
mdperry/biopieces
Automatically exported from code.google.com/p/biopieces
mdperry/breakdancer
SV detection from paired end reads mapping
mdperry/data-munging-with-python
This repository contains all of the Python scripts, input files, and output files associated with the training class, Data Munging with Python.
mdperry/encode-db-dump
Scripts for pulling data to encode format.
mdperry/GenomeVIP
mdperry/grocsvs
Genome-wide reconstruction of complex structural variants
mdperry/gt-download-upload-wrapper
This tool is used to monitor and make gt-download more robust. To be use primarily withing SeqWare workflows
mdperry/hotspot3d
3D hotspot mutation proximity analysis tool
mdperry/icgc-dcmwg
Code relevant to ICGC Data Coordination and Management Working Group
mdperry/jsDataV.is-source
Source code for jsDataV.is visualizations
mdperry/kjh-vita
A simple LaTeX template that I use for my Vita.
mdperry/Managing_Your_Biological_Data_with_Python_3
<<Managing Your Biological Data with Python>> wirtten in Python 3
mdperry/ML-for-scientists
Machine Learning for Scientists Tutorial
mdperry/MuSiC2
identifying mutational significance in cancer genomes
mdperry/my-conky
my conky files
mdperry/orgmode-latex-cv
a simple LaTeX resume template for org-mode
mdperry/pandoc_resume
The Markdown Resume
mdperry/parse-cosmic
Script to carefully parse through and standardize somatic variant lists from COSMIC
mdperry/Pindel2BAM
Convert Pindel data into SAM & BAM formats.
mdperry/pipeline
mdperry/pro-javascript-for-web-apps
Source code for 'Pro JavaScript for Web Apps' by Adam Freeman
mdperry/public-workflows
A place to collaborate on public SeqWare workflows
mdperry/svaba
Structural variation and indel detection by local assembly
mdperry/VariantQC
Variant quality checking scripts.
mdperry/vawk
An awk-like VCF parser
mdperry/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms