mdperry's Stars
The-Sequence-Ontology/OBOB
Generic browser for ontologies that uses OBO format
mongo-express/mongo-express
Web-based MongoDB admin interface, written with Node.js and express
openwdl/wdl
Workflow Description Language - Specification and Implementations
ga4gh/benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
common-workflow-language/cwltool
Common Workflow Language reference implementation
Consonance/consonance
Core consonance utilities for scheduling, reporting on, and provisioning VMs for workflows
raphael-group/comet
CoMEt: A Statistical Approach to Identify Combinations of Mutually Exclusive Alterations in Cancer
eschulte/emacs-web-server
web server running Emacs Lisp handlers.
eschulte/org-ehtml
Export Org-mode files as editable web pages
wireservice/csvkit
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
larssono/vcf-uploader
This tool is intended to be a generic upload script to be used to upload VCF's into GNOS
alpha22jp/simplenote2.el
A new version of emacs helper to interact with Simplenote
cpwardell/3dbarplot
A 3D barplot script for R. Can encode variables using both height and depth of columns.
elastic/elasticsearch-definitive-guide
The Definitive Guide to Elasticsearch
owlcs/owlapi
OWL API main repository
monarch-initiative/dipper
Data Ingestion Pipeline for Monarch
pezmaster31/bamtools
C++ API & command-line toolkit for working with BAM data
msysgit/msysgit
msysGit has been superseded by Git for Windows 2.x
flatsheet/flatsheet-editor
The flatsheet editor as a stand-alone module
msysgit/git
msysGit-based Git for Windows 1.x is now superseded by Git for Windows 2.x
arq5x/bedtools2
bedtools - the swiss army knife for genome arithmetic
ICGC-TCGA-PanCancer/fastq-uploader
This tool is inteded to be used to upload fastq files for the PanCancer project
biojs/biojs
🔬A library of JavaScript components to represent biological data
bmatzelle/gow
Unix command line utilities installer for Windows.
ga4gh/ga4gh-schemas
Models and APIs for Genomic data. RETIRED 2018-01-24
bioperl/Bio-Tools-HMM
BioPerl tools for Hidden Markov Model analysis
nvie/gitflow
Git extensions to provide high-level repository operations for Vincent Driessen's branching model.
jwiegley/git-from-the-bottom-up
An introduction to the architecture and design of the Git content manager
lh3/varcmp
The first CHM1 paper (Li, 2014)
samtools/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats