/mco

Mouse Chromosome Ontology

Primary LanguageRuby

Mouse Chromosome Ontology

The Mouse Chromosome Ontology (MCO) provides simple and stable URIs for mouse reference genome versions to semantically identify mouse chromosomes.

Basic class mco:MouseChromosome is inherited by each chromosome class such as mco:2 and mco:GenomeBuild is inherited by each build version such as mco:GRCm39. Then, for example, the mouse chromosome 2 of the GRCm39 version is represented as mco:2\/GRCm39 (http://identifiers.org/mco/2/GRCm39) which is defined as an instance of mco:2 with build version mco:GRCm39. Each instance of a chromosome has links to external resources such as INSDC, RefSeq, UCSC etc. so that users can be navigated to the chromosome sequence and its annotations.

mco:2
        rdfs:label      "Mouse chromosome 2" ;
        rdfs:subClassOf mco:MouseChromosome .

mco:2\/GRCm39
        rdf:type        mco:2 ;
        mco:build       mco:GRCm39 ;
        mco:length      46709983 ;
        skos:altLabel   "GPC_000001313" ;
        mco:insdc       <http://identifiers.org/insdc/CM000995.3> ;
        mco:refseq      <http://identifiers.org/refseq/NC_000068.8> ;
        mco:ucsc        <http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm39&position=chr2> ;
        mco:ensembl     <http://rdf.ebi.ac.uk/resource/ensembl/mus_musculus/GRCm39/2> ,
                        <http://www.ensembl.org/Mus_musculus/Location/Chromosome?r=2> .

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