meflacava/con-gen-2020

Con-Gen 2020. Eric C. Anderson’s resources

Tuesday, September 8, 2020

The presentation follows the narrative in the following html document:

• https://eriqande.github.io/con-gen-2020/bayes-mcmc-gtyperr-narrative.nb.html

Within that notebook are links to the Shiny Apps I have written to play with genotype likelihoods (as well as directions on how to use them). If you want to get the associated R project, you can download it from Box at:

• https://umt.box.com/s/jdsq97eg2tsse3mw4ig5f3h2ynmdhg74

or get it directly from GitHub:

• https://github.com/eriqande/ngs-genotype-models

And, only as a last resort, if you can’t get the Shiny Apps working in RStudio on your computer, you can visit their pages on shinyapps.io:

• https://eriqande.shinyapps.io/ngs-genotype-models/001-allele-freq-estimation.Rmd
• https://eriqande.shinyapps.io/ngs-genotype-models/002-genotype-likelihoods-from-reads.Rmd