meganshand

Pinned Repositories

gatk
Official code repository for GATK versions 4 and up
Language:Java1.7k 156 4.5k587
ml4h
Language:Jupyter Notebook118 23 12522
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Language:Java967 159 806370
warp
WDL Analysis Research Pipelines
Language:WDL201 27 6993
gatk4-rnaseq-germline-snps-indels
Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
Language:wdl66 5 037
firecloud-tools
Tools for use with FireCloud
Language:Python00
gatk
Official code repository for GATK versions 4 and up
Language:Java00
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Language:Java00
terra-fw-notebooks
A repo for Terra Featured Workspace Notebooks owned and maintained by DSP Customer Delivery
Language:Jupyter Notebook00
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Language:Java281 50 591242

meganshand's Repositories

meganshand/firecloud-tools
Tools for use with FireCloud
Language:Python00
meganshand/gatk
Official code repository for GATK versions 4 and up
Language:Java00
meganshand/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
Language:Java00
meganshand/terra-fw-notebooks
A repo for Terra Featured Workspace Notebooks owned and maintained by DSP Customer Delivery
Language:Jupyter Notebook00