meghankane's Stars
theislab/scarches
Reference mapping for single-cell genomics
jmschrei/tangermeme
Biological sequence analysis for the modern age.
DessimozLab/fold_tree
snakemake pipeline for creating trees from sequence sets
dms-vep/SARS-CoV-2_XBB.1.5_spike_DMS
generatebio/chroma
A generative model for programmable protein design
jbloomlab/SARS2-RBD-escape-calc
SARS-CoV-2 RBD antibody escape calculator
vgteam/vg
tools for working with genome variation graphs
bbuchfink/diamond
Accelerated BLAST compatible local sequence aligner.
davidrasm/Espalier
Espalier is a Python package for working with discordant phylogenetic trees using maximum agreement forests.
mdrasmus/argweaver
Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)
akds/CoevolveML
Deploying synthetic coevolution and machine learning to engineer protein-protein interactions
ZehraKoksal/SNPtotree
A software to resolve the phylogeny of haploid SNPs
flu-crew/PD_stats
A project designed with algorithms to compute PD Stats
Nixtla/mlforecast
Scalable machine 🤖 learning for time series forecasting.
exaloop/codon
A high-performance, zero-overhead, extensible Python compiler using LLVM
LuzieH/SocialMediaModel
Opinion model that simulates how individuals, influencers and media interact on social media platforms. The model is formulated as an agent-based model and by a PDE-approximation. Different strategies of influencers and media can be studied.
yachielab/FRACTAL
FRACTAL: framework for distributed computing to trace large accurate lineages
scverse/scanpy
Single-cell analysis in Python. Scales to >1M cells.
Teichlab/scg_lib_structs
Collections of library structure and sequence of popular single cell genomic methods
ElisabethRoesch/Perspective_Julia_for_Biologists
Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I
nextstrain/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
DerekSHAOZH/Global_Phylogeny_by_Local_Inferences
Final Project for FUB 22Win Phylogeny Inference and Application
polymake/polymake
Read-only mirror (squashed) of the polymake project for convex geometry. For more information please visit
stamatak/standard-RAxML
yangkky/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
angtft/RAxMLGrove
PriceLab/probannopy
A python package for Probanno!
MJCruickshank/SARfish
Ship detection in Sentinel 1 Synthetic Aperture Radar (SAR) imagery
simetenn/uncertainpy
Uncertainpy: a Python toolbox for uncertainty quantification and sensitivity analysis, tailored towards computational neuroscience.
jonathf/chaospy
Chaospy - Toolbox for performing uncertainty quantification.