- Controls: pure RNA from Klein 2015
- mRNA to check mRNA relationships: Klein + 10x
- Protein + mRNA to check protein and cell mRNA: PBMC (CITE-seq & 10x)
- Multiome to check ATAC and Nucleus mRNA: PBMC & HSCS
- DOGMA-seq to check ATAC, protein and cell mRNA: PBMC
| Name | Cells | Modality | Technology | Data |
|---|---|---|---|---|
| Klein_pure | pure RNA | cell mRNA | Indrops v1 | GSM1599501 |
| Klein_mESC | mESC | cell mRNA | Indrops v1 | GSM1599494 |
| 10x_K562 | K562 | cell mRNA | 10x Flex | 10x |
| HSPC_2021 | HSPC | ATAC + nucleus mRNA | 10x multiome v1 | GSM6403408 |
| 10x_pbmc_arc_3k | PBMC | ATAC + nucleus mRNA | 10x multiome v1 | 10x |
| CITE-seq_2017 | PBMC | cell mRNA + Protein | CITE-seq | GSE100866 |
| 10x_pbmc_protein_10k | PBMC | cell mRNA + Protein | 10xv3 | 10x |
| 10x_pbmc_protein_5k | PBMC | cell mRNA + Protein | 10xv3 | 10x |
| DOGMA-seq_2022 | PBMC | ATAC + cell mRNA + Protein | DOGMA-seq | GSE200417 |