Pinned Repositories
Anacapa
#### Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@ucla.edu), Max Ogden (max@maxogden.com), and Baochen Shi (biosbc@gmail.com). Assistance was provided by Rachel Meyer (rsmeyer@ucla.edu).
CALeDNA
Analysis for CALeDNA project
CALeDNA-1
Analysis scripts using data from the CALeDNA consortium
caledna_transect
Scripts for "Landscape Analyses Using eDNA Metabarcoding and Earth Observation Predict Community Biodiversity in California" by Lin et al. 2021
capture_metabar
metabarcoding screening of some capture array sites
ccgp_bobcat_joh
genome assembly comparisons scripts and data for Lin et al. A Reference Genome Assembly of the Bobcat, Lynx rufus, 2022.
CRUX_Creating-Reference-libraries-Using-eXisting-tools
Written by Emily Curd (eecurd@g.ucla.edu), Gaurav Kandlikar (gkandlikar@ucla.edu) and Jesse Gomer (jessegomer@gmail.com). Developed at UCLA for the University of California Conservation Consortium's CALeDNA Program
varDFE
varDFE_analyses
Fin_whale_Population_Genomics
This reposiroy contains all scripts used to perform the analysis described in the research paper Nigenda-Morales and Lin etal. 2021
meixilin's Repositories
meixilin/caledna_transect
Scripts for "Landscape Analyses Using eDNA Metabarcoding and Earth Observation Predict Community Biodiversity in California" by Lin et al. 2021
meixilin/Anacapa
#### Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@ucla.edu), Max Ogden (max@maxogden.com), and Baochen Shi (biosbc@gmail.com). Assistance was provided by Rachel Meyer (rsmeyer@ucla.edu).
meixilin/CALeDNA
Analysis for CALeDNA project
meixilin/CALeDNA-1
Analysis scripts using data from the CALeDNA consortium
meixilin/capture_metabar
metabarcoding screening of some capture array sites
meixilin/ccgp_bobcat_joh
genome assembly comparisons scripts and data for Lin et al. A Reference Genome Assembly of the Bobcat, Lynx rufus, 2022.
meixilin/CRUX_Creating-Reference-libraries-Using-eXisting-tools
Written by Emily Curd (eecurd@g.ucla.edu), Gaurav Kandlikar (gkandlikar@ucla.edu) and Jesse Gomer (jessegomer@gmail.com). Developed at UCLA for the University of California Conservation Consortium's CALeDNA Program
meixilin/DemographyTutorial
Demography Workshop focused on the SFS and Fastsimcoal2
meixilin/grenenet
Grenenet analyses by meixi
meixilin/varDFE
meixilin/varDFE_analyses
meixilin/grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.
meixilin/Hoffman2_Notes
Notes about our lab server
meixilin/mar
Scripts to build the Mutations Area Relationship
meixilin/marApp
meixilin/marflow
meixilin/NGS_pipeline
This repo contains scripts I use for processing reads and calling variants for next generation sequencing data set, specifically whole genome sequencing dataset.
meixilin/OtterExomeProject
scripts associated with my work on the sea otter exome project
meixilin/pi_extinct
meixilin/spatial_extinction_sim