Pinned Repositories
AGADIR
A biophysical model of alpha-helical stability based on statistical mechanics.
ANT
Ambiguous Nucleotide Tool (ANT), software for generating and evaluating degenerate codons for natural and expanded genetic codes.
classic_ml
This project explores different methods of encoding protein sequences and tests various models using scikit-learn.
cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
colcol
A script for color conversions and generating color scales
data_analysis_mbml
Pyro code for reproducing examples from John Winns MBML book.
data_analysis_sivia
Pyro code for reproducing some of the examples from the Data Analysis book by D. S. Sivia.
DNApy
Code for DNA plasmid editing.
Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
mengqvist's Repositories
mengqvist/DNApy
Code for DNA plasmid editing.
mengqvist/data_analysis_mbml
Pyro code for reproducing examples from John Winns MBML book.
mengqvist/ANT
Ambiguous Nucleotide Tool (ANT), software for generating and evaluating degenerate codons for natural and expanded genetic codes.
mengqvist/Machine-learning-for-proteins
Listing of papers about machine learning for proteins.
mengqvist/AGADIR
A biophysical model of alpha-helical stability based on statistical mechanics.
mengqvist/classic_ml
This project explores different methods of encoding protein sequences and tests various models using scikit-learn.
mengqvist/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
mengqvist/colcol
A script for color conversions and generating color scales
mengqvist/data_analysis_sivia
Pyro code for reproducing some of the examples from the Data Analysis book by D. S. Sivia.
mengqvist/enzymemap
Python package to atom map, correct and suggest enzymatic reactions
mengqvist/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
mengqvist/mengqvist
mengqvist/resreg
Resampling strategies for regression
mengqvist/experiment_design
A lightweight library for making efficient experimental designs.
mengqvist/tape
Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
mengqvist/wsvg
A light wrapper around the svg (scalable vector graphics) format, for scripting svg files.