Pinned Repositories
BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
bedtools2
bedtools - the swiss army knife for genome arithmetic
bowtie
An ultrafast memory-efficient short read aligner
bowtie2
A fast and sensitive gapped read aligner
cpanminus
cpanminus - get, unpack, build and install modules from CPAN
diamond
Accelerated BLAST compatible local sequence aligner.
IntroToStatisticalLearningR-
Work on Introduction to Statistical Learning
mantis
A package to annotate protein sequences
MATAFILER
Metagenomic assembly, genome reconstruction and functional as well as taxonomic profiling
megahit
Ultra-fast and memory-efficient (meta-)genome assembler
mengzhaoislearning's Repositories
mengzhaoislearning/diamond
Accelerated BLAST compatible local sequence aligner.
mengzhaoislearning/spades
SPAdes Genome Assembler
mengzhaoislearning/seqtk
Toolkit for processing sequences in FASTA/Q formats
mengzhaoislearning/stat-learning
Notes and exercise attempts for "An Introduction to Statistical Learning"
mengzhaoislearning/RESCRIPt
REference Sequence annotation and CuRatIon Pipeline
mengzhaoislearning/Prodigal
Prodigal Gene Prediction Software
mengzhaoislearning/bowtie2
A fast and sensitive gapped read aligner
mengzhaoislearning/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
mengzhaoislearning/cpanminus
cpanminus - get, unpack, build and install modules from CPAN
mengzhaoislearning/megahit
Ultra-fast and memory-efficient (meta-)genome assembler
mengzhaoislearning/bedtools2
bedtools - the swiss army knife for genome arithmetic
mengzhaoislearning/mantis
A package to annotate protein sequences
mengzhaoislearning/bowtie
An ultrafast memory-efficient short read aligner
mengzhaoislearning/phyloFlash
phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.
mengzhaoislearning/parallel-meta-suite
mengzhaoislearning/MATAFILER
Metagenomic assembly, genome reconstruction and functional as well as taxonomic profiling
mengzhaoislearning/silva-138_classifiers
Classifiers trained on different variable regions of Prokaryotic 16S rRNA genes
mengzhaoislearning/SOAPdenovo2
Next generation sequencing reads de novo assembler.
mengzhaoislearning/BBMap
(Not Offical) BBMap short read aligner, and other bioinformatic tools.
mengzhaoislearning/xmz
mengzhaoislearning/IntroToStatisticalLearningR-
Work on Introduction to Statistical Learning