Pinned Repositories
covid19
Test for COVID-19 with the help of OT-2 robots
hpc-python
Python in High Performance Computing
MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
MGEfinder
A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
PhaseFinder
A pipeline to computationally identify invertible DNA regions and quantify their orientations.
rerio
Research release basecalling models and configurations
Roary
Rapid large-scale prokaryote pan genome analysis
Scoary
Pan-genome wide association studies
tutorials
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!
waafle
WAAFLE (a Workflow to Annotate Assemblies and Find LGT Events) is a method for finding novel LGT (Lateral Gene Transfer) events in assembled metagenomes, including those from human microbiomes.
menickname's Repositories
menickname/waafle
WAAFLE (a Workflow to Annotate Assemblies and Find LGT Events) is a method for finding novel LGT (Lateral Gene Transfer) events in assembled metagenomes, including those from human microbiomes.
menickname/covid19
Test for COVID-19 with the help of OT-2 robots
menickname/hpc-python
Python in High Performance Computing
menickname/MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data
menickname/MGEfinder
A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
menickname/PhaseFinder
A pipeline to computationally identify invertible DNA regions and quantify their orientations.
menickname/rerio
Research release basecalling models and configurations
menickname/Roary
Rapid large-scale prokaryote pan genome analysis
menickname/Scoary
Pan-genome wide association studies
menickname/tutorials
In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!